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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=PSMatch
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Handling and Managing Peptide Spectrum Matches"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel
r-igraph
r-mscoreutils
r-protgenerics
r-qfeatures
r-s4vectors
)
checkdepends=(
r-msdata
r-mzid
r-mzr
r-spectra
r-testthat
)
optdepends=(
r-biocstyle
r-factoextra
r-knitr
r-msdata
r-mzid
r-mzr
r-rmarkdown
r-rpx
r-spectra
r-summarizedexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4c63ca3d541af4e5925bcc2bde7d67ea')
b2sums=('aa12dc6a82a75ed6a6b701ea87d56f9cc78da8caa496c0f01038ee2a4e91c630fd3bc54d300ca6650c9a931dc3285ddca5074fa39f96607eb807e3f949bfece2')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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