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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=QDNAseq
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='Quantitative DNA Sequencing for Chromosomal Aberrations'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biobase
r-cghbase
r-cghcall
r-dnacopy
r-future.apply
r-genomicranges
r-iranges
r-matrixstats
r-r.utils
r-rsamtools
)
optdepends=(
r-biocstyle
r-bsgenome
r-digest
r-future
r-genomeinfodb
r-parallelly
r-qdnaseq.hg19
r-qdnaseq.mm10
r-r.cache
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a968daf40745cc54b48bfe6c2a105d631f88deaeb09008f12d239f6858dd63e3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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