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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=qmtools
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quantitative Metabolomics Data Processing Tools"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ggplot2
r-heatmaply
r-igraph
r-limma
r-mscoreutils
r-patchwork
r-rlang
r-scales
r-summarizedexperiment
r-vim
)
checkdepends=(
r-impute
r-imputelcmd
r-missforest
r-msfeatures
r-pcamethods
r-pls
r-rtsne
r-testthat
r-vsn
)
optdepends=(
r-biocstyle
r-impute
r-imputelcmd
r-knitr
r-missforest
r-msfeatures
r-pcamethods
r-pls
r-rmarkdown
r-rtsne
r-testthat
r-vsn
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8f2150752b2c68e94fa6b7e19e36d980')
b2sums=('de5c7a9afd276c7307e41791dc6ea3aaf303013269adefaaaaa0d389583c3de585f2781e482a4058ac769eb0f148d570dcd6b88ec7499c507030b8dd4d4d978e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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