PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=QSutils
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Quasispecies Diversity"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r-ape
  r-biocgenerics
  r-biostrings
  r-psych
  r-pwalign
)
optdepends=(
  r-biocstyle
  r-ggplot2
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3aa765bb40d4a7eb359417b658873ab1')
b2sums=('7ddcddefce83b132ec2f57581c91f9e9298f87fc92a58fafc23930583677869280e51e1e37d5e9e32bb4457f1e7d3b82669530a50a8b9b450eb96953b77b2871')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}