blob: 22501a410ba865597f208d89286fa9c7b02f2f01 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=r3Cseq
_pkgver=1.52.0
pkgname=r-${_pkgname,,}
pkgver=1.52.0
pkgrel=1
pkgdesc='Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-data.table
r-genomeinfodb
r-genomicranges
r-iranges
r-qvalue
r-rcolorbrewer
r-rsamtools
r-rtracklayer
r-sqldf
r-vgam
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg18.masked
r-bsgenome.hsapiens.ucsc.hg19.masked
r-bsgenome.mmusculus.ucsc.mm10.masked
r-bsgenome.mmusculus.ucsc.mm9.masked
r-bsgenome.rnorvegicus.ucsc.rn5.masked
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('551665a27a5a2d0f1d2e9aa490dccd36b3f776b6592b5a7df869fd92a567316a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|