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# system requirements: C++11, GNU make, samtools
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Rbowtie2
_pkgver=2.12.2
pkgname=r-${_pkgname,,}
pkgver=2.12.2
pkgrel=1
pkgdesc='An R Wrapper for Bowtie2 and AdapterRemoval'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-magrittr
r-rsamtools
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('88b9661582ebcf56024d1585039cf6bfef451058ab43ada465115553d994122a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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