blob: b77f7179004a9be7e4d7be07c9414b0e4409107c (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ReactomeGSA
_pkgver=1.16.1
pkgname=r-${_pkgname,,}
pkgver=1.16.1
pkgrel=1
pkgdesc='Client for the Reactome Analysis Service for comparative multi-omics gene set analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-dplyr
r-ggplot2
r-gplots
r-httr
r-jsonlite
r-progress
r-rcolorbrewer
r-tidyr
)
optdepends=(
r-biobase
r-devtools
r-edger
r-knitr
r-limma
r-reactomegsa.data
r-rmarkdown
r-scater
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('faa9aad8c282a09909833ddcc261f502f1f786869e3425626771160881b9e35c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|