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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=regionReport
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocstyle
r-deformats
r-derfinder
r-deseq2
r-genomeinfodb
r-genomicranges
r-knitr
r-knitrbootstrap
r-refmanager
r-rmarkdown
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-biocmanager
r-biovizbase
r-bumphunter
r-derfinderplot
r-dt
r-edger
r-ggbio
r-ggplot2
r-grid
r-gridextra
r-iranges
r-mgcv
r-pasilla
r-pheatmap
r-rcolorbrewer
r-sessioninfo
r-txdb.hsapiens.ucsc.hg19.knowngene
r-whisker
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f7f22e04f1efd322e8bece91023bb83f400d8d022e4720c493b75b08a906badb')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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