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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RLSeq
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=1
pkgdesc='RLSeq: An analysis package for R-loop mapping data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationhub
r-aws.s3
r-callr
r-caretensemble
r-circlize
r-complexheatmap
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggplotify
r-ggprism
r-pheatmap
r-rcolorbrewer
r-regioner
r-rlhub
r-rtracklayer
r-valr
r-venndiagram
)
optdepends=(
r-annotationdbi
r-biocstyle
r-covr
r-dt
r-futile.logger
r-httr
r-jsonlite
r-kableextra
r-kernlab
r-knitr
r-lintr
r-magick
r-mass
r-org.hs.eg.db
r-r.utils
r-randomforest
r-rcmdcheck
r-readr
r-rmarkdown
r-rpart
r-testthat
r-tibble
r-tidyr
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('997fb6be322ed3fc7ca33faa3a7f74f4ced1e8684bef89db18bf7cc55ab174d9')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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