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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Rmmquant
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='RNA-Seq multi-mapping Reads Quantification Tool'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-apeglm
r-biocstyle
r-deseq2
r-devtools
r-genomicranges
r-org.mm.eg.db
r-rcpp
r-s4vectors
r-summarizedexperiment
r-tbx20bamsubset
r-txdb.mmusculus.ucsc.mm9.knowngene
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('846f0e15df0a3d2c7b11dd93534b22efdb4ee74579d00b66a68fc0db49b650cb')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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