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# system requirements: RNASeqR only support Linux and macOS. Window is notsupported. Python2 is highly recommended. If your machine isPython3, make sure '2to3' command is available.
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RNASeqR
_pkgver=1.14.1
pkgname=r-${_pkgname,,}
pkgver=1.14.1
pkgrel=1
pkgdesc='RNASeqR: an R package for automated two-group RNA-Seq analysis workflow'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-ballgown
r-biostrings
r-clusterprofiler
r-corrplot
r-deseq2
r-dose
r-edger
r-factoextra
r-factominer
r-ggplot2
r-gridextra
r-org.hs.eg.db
r-org.sc.sgd.db
r-pathview
r-performanceanalytics
r-pheatmap
r-rafalib
r-reshape2
r-reticulate
r-rsamtools
r-stringr
r-systempiper
r-systempiperdata
python2
python
)
optdepends=(
r-grid
r-knitr
r-png
r-rmarkdown
r-rnaseqrdata
)
makedepends=(
git
)
source=("git+https://git.bioconductor.org/packages/${_pkgname}")
sha256sums=('SKIP')
build() {
tar -zcvf ${_pkgname}_${_pkgver}.tar.gz ${_pkgname}
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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