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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=RTCGAToolbox
_pkgver=2.26.0
pkgname=r-${_pkgname,,}
pkgver=2.26.0
pkgrel=1
pkgdesc='A new tool for exporting TCGA Firehose data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-biocgenerics
r-data.table
r-delayedarray
r-genomeinfodb
r-genomicranges
r-httr
r-limma
r-raggedexperiment
r-rcircos
r-rcurl
r-rjsonio
r-s4vectors
r-stringr
r-summarizedexperiment
r-tcgautils
r-xml
)
optdepends=(
r-biocstyle
r-homo.sapiens
r-knitr
r-readr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('80568b9975c9f40a3de0a0f751b1891d06d50699bf43e7b03688539be1154ea5')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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