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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=rtracklayer
_pkgver=1.56.0
pkgname=r-${_pkgname,,}
pkgver=1.56.0
pkgrel=1
pkgdesc='R interface to genome annotation files and the UCSC genome browser'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-biocio
r-biostrings
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-rcurl
r-restfulr
r-rsamtools
r-s4vectors
r-xml
r-xvector
r-zlibbioc
)
optdepends=(
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-genefilter
r-genomicfeatures
r-hgu133plus2.db
r-humanstemcell
r-limma
r-microrna
r-org.hs.eg.db
r-runit
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cd215e2e7c0c5ab27c037869289598a25b300537d7ee8181dc6ce6dcc3543ab5')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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