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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scanMiRApp
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=1.4.0
pkgrel=1
pkgdesc='scanMiR shiny application'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-annotationfilter
r-annotationhub
r-biocparallel
r-biostrings
r-data.table
r-digest
r-dt
r-ensembldb
r-fst
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-htmlwidgets
r-iranges
r-plotly
r-rintrojs
r-rtracklayer
r-s4vectors
r-scanmir
r-scanmirdata
r-shiny
r-shinycssloaders
r-shinydashboard
r-waiter
r-shinyjqui
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.rnorvegicus.ucsc.rn6
r-knitr
r-rmarkdown
r-shinytest
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('193faecf494a838c572daf7e95acf005a9ea0c0f74504ff96a2a9222a33ba7b1')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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