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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scBubbletree
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Quantitative visual exploration of scRNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-ape
r-future
r-future.apply
r-ggplot2
r-ggtree
r-patchwork
r-proxy
r-reshape2
r-scales
r-seurat
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-singlecellexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d64f38622d8aec6ebb23e81231710134')
b2sums=('39791c5548c50b07fad86fd217d699bf03c69fb4721c99fd16cbf9e28247c4652c2a2da30e247897676820a3ab532c1b027a8fb02b86ff146583152b9610ec19')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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