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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=sccomp
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-dplyr
r-forcats
r-ggplot2
r-ggrepel
r-glue
r-lifecycle
r-magrittr
r-patchwork
r-purrr
r-rcpp
r-rcppparallel
r-readr
r-rlang
r-rstan
r-rstantools
r-scales
r-seuratobject
r-singlecellexperiment
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
makedepends=(
r-bh
r-rcppeigen
r-stanheaders
)
checkdepends=(
r-testthat
r-tidyseurat
)
optdepends=(
r-biocstyle
r-knitr
r-loo
r-markdown
r-testthat
r-tidyseurat
r-tidysinglecellexperiment
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8a24adb07d155b94645a5f684e1455f6')
b2sums=('50496ee054c58cd1d4a4487240839b5413553fcce518d8797919d39916260f823cf79b1c68cc285243373cede1fdedadee0c89e04dedabcd43c7831cd276d1c5')
build() {
mkdir build
# compilation needs a lot of memory
MAKEFLAGS+=" -j1"
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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