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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scDesign3
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
r-biocparallel
r-dplyr
r-gamlss
r-gamlss.dist
r-ggplot2
r-irlba
r-matrixstats
r-mclust
r-mvtnorm
r-pbmcapply
r-rvinecopulib
r-singlecellexperiment
r-summarizedexperiment
r-tibble
r-umap
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-mvnfast
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('84c2f07635607b2167f24750f952745a')
sha256sums=('229a556fd77e2ec861d1b4e1f915b0fe4e1095095cad380319680a32a1b4d5dc')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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