blob: cd99bdb4d39e540134a83aa9a2eca2d1a66bf1e6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scFeatures
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(GPL3)
depends=(
r-ape
r-aucell
r-biocparallel
r-cli
r-delayedarray
r-delayedmatrixstats
r-dplyr
r-dt
r-ensdb.hsapiens.v79
r-ensdb.mmusculus.v79
r-ensembldb
r-glue
r-gsva
r-gtools
r-matrixgenerics
r-msigdbr
r-proxyc
r-reshape2
r-rmarkdown
r-seurat
r-singlecellsignalr
r-spatialexperiment
r-spatstat.explore
r-spatstat.geom
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-biocstyle
r-classifyr
r-clusterprofiler
r-knitr
r-org.hs.eg.db
r-s4vectors
r-survminer
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('00b3e1296507cdf60879fd6d112c1e53')
sha256sums=('9777d663977588c4848c595f053f6859f09cef67a1a1d2d9fd5c06bdb47faf24')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|