blob: 34f00281c714f6f7a1bbc22507174daf9c7d5671 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scifer
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=4
pkgdesc="Single-Cell Immunoglobulin Filtering of Sanger Sequences"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biostrings
r-data.table
r-decipher
r-dplyr
r-flowcore
r-ggplot2
r-gridextra
r-kableextra
r-knitr
r-plyr
r-rlang
r-rmarkdown
r-sangerseqr
r-scales
r-stringr
r-tibble
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-fs
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('82fb184bec0c09d5f7067baf81f8fee1')
b2sums=('f1639e305ad06eba8c97912b0b600b98f64f0e6bf0d74078f67432a53f061635ace877bb854733d5773231b19ee73a6b7521172d7291ae5a16de86e0c9d727ae')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|