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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=scruff
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='Single Cell RNA-Seq UMI Filtering Facilitator (scruff)'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggbio
r-ggplot2
r-ggthemes
r-parallelly
r-plyr
r-rsamtools
r-rsubread
r-rtracklayer
r-s4vectors
r-scales
r-shortread
r-singlecellexperiment
r-stringdist
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6b0f11d046e604b5b1cdf97bb6f39f93a759aa51f797cb6991e1c7a788ec883f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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