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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=scviR
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="experimental inferface from R to scvi-tools"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-basilisk
r-biocfilecache
r-limma
r-matrixgenerics
r-pheatmap
r-reticulate
r-s4vectors
r-scater
r-shiny
r-singlecellexperiment
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-knitr
r-reshape2
r-rhdf5
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('71d6c427fcc042ac8b011a31935641df')
sha256sums=('0a15def9dcf1483c867cf45a795b14da37ac97aa686a29e50d2fda5b55475fd9')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla test.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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