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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=seqArchRplus
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Downstream analyses of promoter sequence architectures and HTML report generation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-biostrings
r-bsgenome
r-chipseeker
r-cli
r-clusterprofiler
r-cowplot
r-factoextra
r-genomeinfodb
r-genomicranges
r-ggimage
r-ggplot2
r-gridextra
r-heatmaps
r-iranges
r-magick
r-rcolorbrewer
r-s4vectors
r-scales
r-seqarchr
r-seqpattern
)
optdepends=(
r-biocstyle
r-bsgenome.dmelanogaster.ucsc.dm6
r-cager
r-covr
r-knitr
r-org.dm.eg.db
r-pdftools
r-rmarkdown
r-slickr
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-xfun
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9f20e2eed3e5b5a498564ea201b251d9')
b2sums=('1823f62e7c6203b0e048a47df9e49b93f393943f20a719b74e5802e368c1fdf87a157ee2d9899c7dfab92c30232ca5eccc55b68777ebc58c61b8982b83ceb799')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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