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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SeqArray
_pkgver=1.44.0
pkgname=r-${_pkgname,,}
pkgver=1.44.0
pkgrel=1
pkgdesc='Data management of large-scale whole-genome sequence variant calls'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-gdsfmt
r-genomeinfodb
r-genomicranges
r-iranges
r-s4vectors
)
optdepends=(
r-biobase
r-biocgenerics
r-biocparallel
r-crayon
r-digest
r-knitr
r-markdown
r-rcpp
r-rmarkdown
r-rsamtools
r-runit
r-snprelate
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('13a1b9b44dd66e6e4141ae089f2c9f762bdbf9090c6ac14186113963fc3108bd')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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