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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=Seurat
_pkgver=4.3.0.1
pkgname=r-${_pkgname,,}
pkgver=4.3.0.1
pkgrel=1
pkgdesc='Tools for Single Cell Genomics'
arch=('x86_64')
url="https://cran.r-project.org/package=${_pkgname}"
license=('MIT')
depends=(
r
r-cowplot
r-fitdistrplus
r-future
r-future.apply
r-ggplot2
r-ggrepel
r-ggridges
r-httr
r-ica
r-igraph
r-irlba
r-jsonlite
r-leiden
r-lmtest
r-matrixstats
r-miniui
r-patchwork
r-pbapply
r-plotly
r-png
r-progressr
r-rann
r-rcolorbrewer
r-rcpp
r-rcppannoy
r-rcppeigen
r-rcppprogress
r-reticulate
r-rlang
r-rocr
r-rtsne
r-scales
r-scattermore
r-sctransform
r-seuratobject
r-shiny
r-spatstat.explore
r-spatstat.geom
r-tibble
r-uwot
)
optdepends=(
r-ape
r-biobase
r-biocgenerics
r-data.table
r-deseq2
r-enrichr
r-genomeinfodb
r-genomicranges
r-ggrastr
r-hdf5r
r-iranges
r-limma
r-mast
r-metap
r-mixtools
r-monocle
r-r.utils
r-rfast2
r-rsvd
r-rtracklayer
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment
r-testthat
r-vgam
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a42b32447e7a98875bda3002936fe8d901f42b3142460d4ed4ef6c56d1e48b12')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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