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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SICtools
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='Find SNV/Indel differences between two bam files with near relationship'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-doparallel
r-genomicranges
r-iranges
r-matrixstats
r-plyr
r-rsamtools
r-stringr
)
optdepends=(
r-biocgenerics
r-knitr
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('db21ebe48ff6482e20aea743cd05ce2f4b72cb693b4f8cbb11056422150ab37a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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