blob: 3e21d1f5e8034b6b12fd77ae09d73245be8b53cc (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
|
# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=signeR
_pkgver=2.0.2
pkgname=r-${_pkgname,,}
pkgver=2.0.2
pkgrel=1
pkgdesc='Empirical Bayesian approach to mutational signature discovery'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
gcc
r
r-ada
r-biocfilecache
r-biocgenerics
r-biostrings
r-bsgenome
r-bsplus
r-clue
r-cowplot
r-dplyr
r-dt
r-e1071
r-future
r-future.apply
r-genomeinfodb
r-genomicranges
r-ggplot2
r-ggpubr
r-glmnet
r-iranges
r-kknn
r-listenv
r-magrittr
r-maxstat
r-nloptr
r-nmf
r-pheatmap
r-pmcmrplus
r-ppclust
r-proc
r-proxy
r-pvclust
r-randomforest
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-readr
r-reshape2
r-rtracklayer
r-scales
r-shiny
r-shinycssloaders
r-shinydashboard
r-shinywidgets
r-survivalanalysis
r-survminer
r-tibble
r-tidyr
r-variantannotation
r-vgam
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('43da26c1e05b3d178e9227ce39a3abc5f70c1f5ae9ef19dfa990c9357b51fada')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|