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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=singleCellTK
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=2.14.0
pkgrel=1
pkgdesc='Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-anndata
r-annotationhub
r-ape
r-batchelor
r-biobase
r-biocparallel
r-celda
r-celldex
r-circlize
r-colorspace
r-colourpicker
r-complexheatmap
r-cowplot
r-data.table
r-delayedarray
r-delayedmatrixstats
r-deseq2
r-dplyr
r-dropletutils
r-dt
r-eds
r-enrichr
r-ensembldb
r-experimenthub
r-fields
r-ggplot2
r-ggplotify
r-ggrepel
r-ggtree
r-gridextra
r-gseabase
r-gsva
r-gsvadata
r-igraph
r-limma
r-magrittr
r-mast
r-matrixstats
r-metap
r-msigdbr
r-multtest
r-plotly
r-plyr
r-r.utils
r-reshape2
r-reticulate
r-rlang
r-rmarkdown
r-rocr
r-rtsne
r-s4vectors
r-scater
r-scdblfinder
r-scds
r-scmerge
r-scran
r-scrnaseq
r-scuttle
r-seurat
r-shiny
r-shinyalert
r-shinycssloaders
r-shinyjs
r-singlecellexperiment
r-singler
r-soupx
r-summarizedexperiment
r-sva
r-tenxpbmcdata
r-tibble
r-trajectoryutils
r-tscan
r-tximport
r-vam
r-withr
r-yaml
r-zellkonverter
r-zinbwave
)
optdepends=(
r-biocgenerics
r-biocstyle
r-fastmap
r-harmony
r-kableextra
r-knitr
r-lintr
r-org.mm.eg.db
r-rcolorbrewer
r-rsubread
r-shinybs
r-shinyfiles
r-shinyjqui
r-shinythemes
r-shinywidgets
r-spelling
r-stringr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c42bdbfc62dacf88a783e1e479c7561b2a1d689d9b2cbbacce24b132036d171b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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