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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=sparrow
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='Take command of set enrichment analyses through a unified interface'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-babelgene
r-biocgenerics
r-biocparallel
r-biocset
r-checkmate
r-circlize
r-complexheatmap
r-data.table
r-delayedmatrixstats
r-edger
r-ggplot2
r-gseabase
r-irlba
r-limma
r-plotly
r-viridis
)
optdepends=(
r-annotationdbi
r-biasedurn
r-biobase
r-biocstyle
r-deseq2
r-dplyr
r-dtplyr
r-fgsea
r-go.db
r-goseq
r-gsva
r-hexbin
r-kernsmooth
r-knitr
r-magrittr
r-matrixstats
r-msigdbr
r-panther.db
r-r.utils
r-reactome.db
r-rmarkdown
r-statmod
r-stringr
r-summarizedexperiment
r-testthat
r-webshot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6a0dded80b7c8552091d6a81b46d3bd3288920db89a962c31e8d7e749e32166f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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