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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=SPONGE
_pkgver=1.18.1
pkgname=r-${_pkgname,,}
pkgver=1.18.1
pkgrel=1
pkgdesc='Sparse Partial Correlations On Gene Expression'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biobase
r-data.table
r-dorng
r-expm
r-foreach
r-glmnet
r-grbase
r-igraph
r-iterators
r-logging
r-ppcor
r-tidyverse
r-caret
r-dplyr
r-biomart
r-randomforest
r-ggridges
r-cvms
r-mirbaseconverter
r-complexheatmap
r-ggplot2
r-metbrewer
r-rlang
r-tnet
r-ggpubr
r-stringr
r-tidyr
)
optdepends=(
r-bigmemory
r-digest
r-doparallel
r-ggrepel
r-gridextra
r-knitr
r-rmarkdown
r-testthat
r-visnetwork
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cd6a8c034b631213b9ea6ccc71644ad28c41c9897224748ee888edc60c493c1c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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