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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=StructuralVariantAnnotation
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Variant annotations for structural variants"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-biocgenerics
r-biostrings
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-pwalign
r-rlang
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biovizbase
r-bsgenome.hsapiens.ucsc.hg19
r-devtools
r-ggbio
r-ggplot2
r-knitr
r-rmarkdown
r-roxygen2
r-testthat
r-tidyverse
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ac4f8f29d045efae1e14f930a08aec4e')
b2sums=('9b9357760610e4672d5a8b132b82c1a0aac4ed950b8666118e94ea01e28fc9e2ceba119c76f73f7fd14af3644f01ba47428379cd79c8489fd2fb27645e998265')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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