blob: 832f3f384334b883d4b25c4978021fa964af5776 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=StructuralVariantAnnotation
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Variant annotations for structural variants"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-biocgenerics
r-biostrings
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-iranges
r-pwalign
r-rlang
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biovizbase
r-bsgenome.hsapiens.ucsc.hg19
r-devtools
r-ggbio
r-ggplot2
r-knitr
r-rmarkdown
r-roxygen2
r-testthat
r-tidyverse
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('af0b4821d3392d8c5d3c6785546292ca')
b2sums=('3118febf7f4d281227a9a021f8004898d3ab8356721449295ad1ebcac9ab04e4ab5e2e325b4a1ac9236973129a75a2ab58f634316c362d107187def1df91300c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|