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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=transcriptR
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-caret
r-chipseq
r-e1071
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-iranges
r-proc
r-reshape2
r-rsamtools
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('85ac1470223077362f14bedc47e67df6d2420bb0a6fb1d002de820bbdde36401')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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