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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TREG
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-purrr
r-rafalib
r-summarizedexperiment
)
checkdepends=(
r-dplyr
r-testthat
)
optdepends=(
r-biocfilecache
r-biocstyle
r-dplyr
r-ggplot2
r-knitr
r-pheatmap
r-refmanager
r-rmarkdown
r-sessioninfo
r-singlecellexperiment
r-testthat
r-tibble
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d76ba3f3707e1810e6491d04013d6e7b')
b2sums=('9f96770c568375aa2c9c207db73caaacaf69b10a4dfc2fd40b782b021b02e26333411b6491d1d95963bea5b10e9cf2c14bbf3987f1563bebfd5f78ea68c4e953')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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