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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=TREG
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-purrr
r-rafalib
r-summarizedexperiment
)
checkdepends=(
r-dplyr
r-testthat
)
optdepends=(
r-biocfilecache
r-biocstyle
r-dplyr
r-ggplot2
r-knitr
r-pheatmap
r-refmanager
r-rmarkdown
r-sessioninfo
r-singlecellexperiment
r-testthat
r-tibble
r-tidyr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d76ba3f3707e1810e6491d04013d6e7b')
sha256sums=('e56b07ec0a89fd774846e4c5f600efc221bec508f60905f6694909cab9c5ab7f')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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