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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=uncoverappLib
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=1
pkgdesc='Interactive graphical application for clinical assessment of sequence coverage at the base-pair level'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocfilecache
r-bsgenome.hsapiens.ucsc.hg19
r-condformat
r-dt
r-ensdb.hsapiens.v75
r-ensdb.hsapiens.v86
r-genomicranges
r-gviz
r-homo.sapiens
r-markdown
r-openxlsx
r-org.hs.eg.db
r-organismdbi
r-processx
r-rappdirs
r-rlist
r-rsamtools
r-shiny
r-shinybs
r-shinycssloaders
r-shinyjs
r-shinywidgets
r-stringr
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-bsgenome.hsapiens.ucsc.hg38
)
optdepends=(
r-biocstyle
r-dplyr
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2c8cbc5fe9f2883da696406c1338a51ccee77a348963560fbf7b247c4f7c1b64')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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