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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=VariantExperiment
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-delayedarray
r-delayeddataframe
r-gdsarray
r-gdsfmt
r-genomicranges
r-iranges
r-s4vectors
r-seqarray
r-snprelate
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('88397cb5ce01a31f59b33883ec9f1fb65617714fc39ffd23c6273f39519540f6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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