PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=zinbwave
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='Zero-Inflated Negative Binomial Model for RNA-Seq Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biocparallel
  r-edger
  r-genefilter
  r-singlecellexperiment
  r-softimpute
  r-summarizedexperiment
)
optdepends=(
  r-biocstyle
  r-biomart
  r-deseq2
  r-ggplot2
  r-knitr
  r-magrittr
  r-matrixstats
  r-rmarkdown
  r-rtsne
  r-scrnaseq
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('913b05cf269efe4d8bcb9001610218d1b9bc1e940b3f0e93648fb0a0dddff41f')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: