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# Maintainer: Grey Christoforo <grey at christoforo dot net>
pkgname=rsem
_pkgname=${pkgname^^}
pkgver=1.3.3
pkgrel=1
pkgdesc="accurate quantification of gene and isoform expression from RNA-Seq data"
arch=(x86_64)
url="http://deweylab.biostat.wisc.edu/rsem/"
install=rsem.install
license=(GPL3)
depends=('perl' 'r')
optdepends=('bowtie2')
source=(https://github.com/deweylab/${_pkgname}/archive/v${pkgver}.tar.gz)
md5sums=('bf62eda836ec77debd0e308f7adf50d7')
build() {
cd "${srcdir}/${_pkgname}-${pkgver}"
make all
}
package() {
mkdir -p "${pkgdir}/opt/${pkgname}"
cd "${srcdir}/${_pkgname}-${pkgver}"
make install prefix="${pkgdir}/opt/${pkgname}"
#mv "${srcdir}/${_pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}"
mkdir -p "$pkgdir/etc/profile.d"
echo "export PATH=/opt/${pkgname}/bin:"'$PATH' > "$pkgdir/etc/profile.d/${pkgname}.sh"
}
# vim:set ts=2 sw=2 et:
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