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# Maintainer: Thiago L. A. Miller <thiago_leisrael@hotmail.com>
pkgname=salmon
pkgver=0.11.2
pkgrel=2
pkgdesc="Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments"
arch=('x86_64')
url="https://combine-lab.github.io/$pkgname/"
license=('GPL')
depends=('bzip2' 'intel-tbb' 'jemalloc' 'xz')
makedepends=('boost>=1.55' 'cmake' 'unzip')
options=('!emptydirs')
source=("$pkgname-$pkgver.tar.gz"::"https://github.com/COMBINE-lab/$pkgname/archive/v$pkgver.tar.gz")
md5sums=('d81f083e71adc6d46a21ed14df624136')
build() {
cd "$pkgname-$pkgver"
cmake \
-DCMAKE_COLOR_MAKEFILE:BOOL='ON' \
-DCMAKE_INSTALL_PREFIX:PATH='/usr' \
-Wno-dev \
.
make
}
package() {
cd "$pkgname-$pkgver"
make DESTDIR="$pkgdir" install
}
# Local Variables:
# mode: shell-script
# sh-basic-offset: 2
# End:
# vim:set ts=2 sw=2 et:
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