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# Maintainer: Philipp A. <flying-sheep@web.de>
# Contributor: Kyle Meyer <kyle@kyleam.com>
pkgname=snakemake
pkgver=7.8.0
pkgrel=1
pkgdesc='Python-based language and execution environment for GNU Make-like workflows'
arch=(any)
url='https://snakemake.readthedocs.io'
depends=(
python
python-wrapt
python-requests
python-ratelimiter
python-yaml
python-configargparse
python-appdirs
python-datrie
python-jsonschema
python-docutils
python-gitpython
python-psutil
jupyter-nbformat
python-toposort
python-connection_pool
'python-pulp>=2.0'
'python-smart_open>=3.0'
python-stopit
python-tabulate
python-yte
python-jinja
python-retry
)
makedepends=(python-setuptools python-build python-installer)
optdepends=(
'python-pygments: For report generation'
'python-biopython: For GenBank/NCBI Entrez support'
'python-easywebdav: For WebDAV support'
'python-pysftp: For SFTP support'
'python-boto3: For AWS support'
'python-moto: For AWS support'
'python-dropbox: For Dropbox support'
'python-ftputil: For FTP support'
'python-xrootd: For XRootD support'
'slacker: For messaging'
)
license=(MIT)
source=("https://files.pythonhosted.org/packages/source/${pkgname::1}/$pkgname/$pkgname-$pkgver.tar.gz")
sha256sums=('31808725cf72733495c0f0e2a2f1c6d58fc9a27f90946792e8017c3b746923da')
build() {
cd "$srcdir/$pkgname-$pkgver"
python -m build --wheel --no-isolation
}
package() {
cd "$srcdir/$pkgname-$pkgver"
python -m installer --destdir="$pkgdir" dist/*.whl
local pyver=$(python -c 'import sys; print("{}.{}".format(*sys.version_info[:2]))')
install -d "$pkgdir/etc/bash_completion.d"
PYTHONPATH="$pkgdir/usr/lib/python$pyver/site-packages:$PYTHONPATH" \
"$pkgdir/usr/bin/snakemake" --bash-completion >"$pkgdir/etc/bash_completion.d/snakemake"
}
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