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# Maintainer: Nigel Michki <nigeil@yahoo.com>
pkgname=star-seq-alignment
pkgver=2.7.2a
pkgrel=1
pkgdesc="An RNA-seq alignment suite, by Alexander Dobin"
arch=('i686'
'x86_64')
url="https://github.com/alexdobin/STAR"
license=('GPLv3')
groups=()
conflicts=()
depends=()
makedepends=('wget'
'gcc')
optdepends=()
source=('https://github.com/alexdobin/STAR/archive/2.7.2a.tar.gz')
md5sums=('f99240e7a863a8f1bda55a6d702af7d1')
prepare() {
# msg2 "Downloading files"
# cd $srcdir
# wget $source
msg2 "Decompressing files"
tar -xzvf $pkgver.tar.gz -C $srcdir/
}
build() {
cd $srcdir/STAR-$pkgver/source
make LDFLAGSextra=-flto CXXFLAGSextra="-flto -march=native" -j 20 STAR
}
package() {
mkdir $pkgdir/usr
mkdir $pkgdir/usr/bin
cp $srcdir/STAR-$pkgver/source/STAR $pkgdir/usr/bin/star-seq-alignment
}
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