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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
# Contributer: Grey Christoforo <first name [at] last name [dot] net>
pkgname=ucsc-kent-genome-tools
pkgver=353
pkgrel=1
pkgdesc="UCSC Kent bioinformatics utilities: kent source utilities"
arch=('x86_64')
url="http://hgdownload.soe.ucsc.edu/admin/exe/"
license=('custom:UCSC')
install="${pkgname}".install
depends=('libpng' 'mariadb-clients' 'uuid' 'openssl')
source=(
.hg.conf
"${pkgname}".sh
"${pkgname}"-"${pkgver}".src.tgz::http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v"${pkgver}".src.tgz
)
sha256sums=(
'359db5b022847d3d674f21821fa08a363d2183379d59a2b63129fcf90954d674'
'5ccec9d5e4de9be22746fab1591127b61176c8c4d586c0dd1df13ee5e52a5367'
'f3e7609069b195ef5219e39e0181ced1988f8d3843579d36549fc47e808b27a1'
)
prepare() {
cd "${srcdir}"/userApps
make clean
}
build() {
cd "${srcdir}"/userApps
make all
}
package() {
install -Dm644 .hg.conf "${pkgdir}"/opt/"${pkgname}"/.hg.conf
install -Dm755 "${pkgname}".sh "${pkgdir}"/etc/profile.d/"${pkgname}".sh
for script in "${srcdir}"/userApps/bin/*; do
install -Dm755 "${script}" "${pkgdir}"/opt/"${pkgname}"/$(basename "${script}")
done
install -Dm644 "${srcdir}"/userApps/README "${pkgdir}"/usr/share/doc/"${pkgname}"/README
install -Dm644 "${srcdir}"/userApps/kentUtils.Documentation.txt "${pkgdir}"/usr/share/doc/"${pkgname}"/kentUtils.Documentation.txt
install -Dm644 "${srcdir}"/userApps/licenseUcscGenomeBrowser.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/licenseUcscGenomeBrowser.txt
install -Dm644 "${srcdir}"/userApps/GenomeBrowserLicense.pdf "${pkgdir}"/usr/share/licenses/"${pkgname}"/GenomeBrowserLicense.pdf
install -Dm644 "${srcdir}"/userApps/licenseBlat.txt "${pkgdir}"/usr/share/licenses/"${pkgname}"/licenseBlat.txt
}
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