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# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgbase=viennarna
pkgname=('viennarna' 'python2-rna' 'perl-rna')
pkgver=2.2.4
pkgrel=1
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
license=('Custom')
url="http://www.tbi.univie.ac.at/RNA"
groups=('viennarna-package')
makedepends=( 'perl'
'python2'
'libtool'
'check')
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
sha256sums=('f0d4cdeb9d0179e7ac1fc6825ca109f1fcd62104d056e9c8688e618550267fda')
build() {
cd "${srcdir}/ViennaRNA-${pkgver}"
./configure --with-cluster --prefix=/usr INSTALLDIRS=vendor PYTHON_VERSION=2
make
}
check() {
cd "$srcdir/ViennaRNA-${pkgver}"
make check
}
package_viennarna() {
depends=('perl')
optdepends=('gsl: use a variety of optimization methods in RNApvmin'
'gri: create 2D plots of secondary structure landscape with RNA2Dfold')
provides=('Kinfold=1.3' 'RNAforester=2.0' "viennarna2=${pkgver}" "libRNA=${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
# install executables
cd src/bin/
make DESTDIR="${pkgdir}" install
cd ../Kinfold
make DESTDIR="${pkgdir}" install
cd ../RNAforester
install -Dm755 src/RNAforester "${pkgdir}/usr/bin/"
install -Dm644 man/RNAforester.1* "${pkgdir}/usr/share/man/man1/"
cd ../Utils
make DESTDIR="${pkgdir}" install
cd ../Cluster
make DESTDIR="${pkgdir}" install
cd ../..
# install library and header files
cd src/ViennaRNA
make DESTDIR="${pkgdir}" install
cd ../..
# install manpages, documentation, and misc files
cd man
make DESTDIR="${pkgdir}" install
cd ../doc
make DESTDIR="${pkgdir}" install
cd ../misc
make DESTDIR="${pkgdir}" install
cd ..
install -Dm644 COPYING "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
# cleanup after dirty install ...
install -dm755 "$pkgdir"/usr/bin/vendor_perl
for perlscript in "$pkgdir"/usr/share/ViennaRNA/bin/*.pl ; do
mv "$perlscript" "$pkgdir/usr/bin/vendor_perl/"
done
# no need for that file it is outdated anyway
rm $pkgdir/usr/share/info/dir
}
package_python2-rna() {
depends=('python2' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Python
make DESTDIR="${pkgdir}" install
}
package_perl-rna() {
depends=('perl' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Perl
make DESTDIR="${pkgdir}" install
}
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