blob: 9a79603c048698df0830139183f295cddd0ca7a8 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
|
# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgbase=viennarna
pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna')
pkgver=2.3.2
pkgrel=1
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
license=('Custom')
url="http://www.tbi.univie.ac.at/RNA"
groups=('viennarna-package')
makedepends=( 'perl'
'python2'
'python'
'libtool'
'check')
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
sha256sums=('6d4f8b4375d0bc68655715303026a7c16c26967d7713ac83b3aca9478374ec6e')
build() {
cd "${srcdir}/ViennaRNA-${pkgver}"
./configure --with-cluster --with-python3 --prefix=/usr INSTALLDIRS=vendor
make
}
check() {
cd "$srcdir/ViennaRNA-${pkgver}"
make check
}
package_viennarna() {
depends=('perl')
optdepends=('gsl: use a variety of optimization methods in RNApvmin'
'gri: create 2D plots of secondary structure landscape with RNA2Dfold')
provides=('Kinfold=1.3' 'RNAforester=2.0' "viennarna2=${pkgver}" "libRNA=${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
# install executables
cd src/bin/
make DESTDIR="${pkgdir}" install
cd ../Kinfold
make DESTDIR="${pkgdir}" install
cd ../RNAforester
install -Dm755 src/RNAforester "${pkgdir}/usr/bin/"
install -Dm644 man/RNAforester.1* "${pkgdir}/usr/share/man/man1/"
cd ../Utils
make DESTDIR="${pkgdir}" install
cd ../Cluster
make DESTDIR="${pkgdir}" install
cd ../..
# install library and header files
cd src/ViennaRNA
make DESTDIR="${pkgdir}" install
cd ../..
# install manpages, documentation, and misc files
cd man
make DESTDIR="${pkgdir}" install
cd ../doc
make DESTDIR="${pkgdir}" install
cd ../misc
make DESTDIR="${pkgdir}" install
cd ..
# install pkg-config file
install -Dm644 RNAlib2.pc "$pkgdir/usr/lib/pkgconfig/RNAlib2.pc"
install -Dm644 COPYING "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
# cleanup after dirty install ...
install -dm755 "$pkgdir"/usr/bin/vendor_perl
for perlscript in "$pkgdir"/usr/share/ViennaRNA/bin/*.pl ; do
mv "$perlscript" "$pkgdir/usr/bin/vendor_perl/"
done
# no need for that file it is outdated anyway
rm $pkgdir/usr/share/info/dir
}
package_python2-rna() {
depends=('python2' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Python
make DESTDIR="${pkgdir}" install
}
package_python-rna() {
depends=('python' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Python3
make DESTDIR="${pkgdir}" install
}
package_perl-rna() {
depends=('perl' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Perl
make DESTDIR="${pkgdir}" install
}
|