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# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgname=viennarna
pkgver=2.2.0
pkgrel=3
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
license=('Custom')
url="http://www.tbi.univie.ac.at/RNA"
depends=( 'perl'
'python2')
optdepends=('gsl: use a variety of optimization methods in RNApvmin'
'gri: create 2D plots of secondary structure landscape with RNA2Dfold')
conflicts=('viennarna')
makedepends=( 'libtool'
'check')
provides=('Kinfold=1.3' 'RNAforester=2.0' "viennarna2=${pkgver}")
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
sha256sums=('78910cc1dc44de22ba081d841c84a32dfc52f0ec186447eafd82cb15cfdbf991')
build() {
cd "${srcdir}/ViennaRNA-${pkgver}"
./configure --with-cluster --prefix=/usr PYTHON_VERSION=2 || return 1
make || return 1
}
check() {
cd "$srcdir/ViennaRNA-${pkgver}"
make check
}
package() {
cd "${srcdir}/ViennaRNA-${pkgver}"
make DESTDIR="${pkgdir}" install || return 1
install -Dm644 COPYING "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
# cleanup after dirty install ...
for perlscript in "$pkgdir"/usr/share/ViennaRNA/bin/*.pl ; do
mv "$perlscript" "$pkgdir/usr/bin/$(basename "$perlscript" .pl)"
done
mv "$pkgdir"/usr/share/ViennaRNA/bin/* "$pkgdir"/usr/bin
rmdir "$pkgdir/usr/share/ViennaRNA/bin"
# no need for that file it is outdated anyway
rm $pkgdir/usr/share/info/dir
}
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