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# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
pkgname=wiggletools
pkgver=1.2.2
pkgrel=1
pkgdesc="basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency"
arch=('i686' 'x86_64')
url="https://github.com/Ensembl/WiggleTools"
license=('Apache')
depends=('gsl' 'htslib' 'libbigwig' 'python2')
source=("$pkgname-$pkgver.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v$pkgver.tar.gz")
prepare() {
cd $srcdir/WiggleTools-$pkgver
sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \
-i python/wiggletools/*.py
}
build() {
cd $srcdir/WiggleTools-$pkgver
make
}
check() {
cd $srcdir/WiggleTools-$pkgver
make test
}
package() {
cd $srcdir/WiggleTools-$pkgver
install -Dm755 bin/wiggletools $pkgdir/usr/bin/wiggletools
for pythonscript in bin/*.py ; do
install -Dm755 $pythonscript $pkgdir/usr/bin/$(basename $pythonscript .py)
done
for shellscript in bin/*.sh ; do
install -Dm755 $shellscript $pkgdir/usr/bin/$(basename $shellscript .sh)
done
}
md5sums=('cf573322cdd30adb06eff9c921d0e930')
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