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# Maintainer: Tomasz Zok <tomasz.zok [at] gmail.com>
pkgname=x3dna
_pkgver=2.3
pkgver=${_pkgver}.3_20180906
pkgrel=1
pkgdesc="3DNA is a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid-containing structures. Please see: http://forum.x3dna.org/site-announcements/download-instructions/"
arch=('x86_64')
url="http://forum.x3dna.org/downloads/3dna-download/"
license=('custom')
depends=('ruby')
source=("${pkgname}.md5")
md5sums=('SKIP')
package() {
archive=${pkgname}-v${_pkgver}-linux-64bit.tar.gz
if [[ ! -r "../${archive}" ]]; then
echo "You must download ${archive} on your own from the project webpage"
echo 'See: http://forum.x3dna.org/site-announcements/download-instructions/'
return 1
fi
if ! md5sum --quiet --check "${pkgname}.md5"; then
echo 'Invalid checksum!'
return 1
fi
bsdtar xfz ../${archive}
cd ${pkgname}-v${_pkgver}/
install -d ${pkgdir}/etc/profile.d/
install -d ${pkgdir}/opt/${pkgname}-v${_pkgver}/
install -d ${pkgdir}/usr/bin/
# fix conflict with hunspell package
mv bin/analyze bin/analyze-x3dna
install bin/* ${pkgdir}/usr/bin/
cp -R config doc examples fiber lib np_recipes perl_scripts src ${pkgdir}/opt/${pkgname}-v${_pkgver}/
echo "export X3DNA=/opt/${pkgname}-v${_pkgver}" > "$pkgdir/etc/profile.d/x3dna.sh"
}
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