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--- spaln-ver3.0.2.orig/src/Makefile.in 2023-10-31 07:23:58.000000000 +0530
+++ spaln-ver3.0.2.new/src/Makefile.in 2023-11-17 00:07:42.903202161 +0530
@@ -6,14 +6,14 @@
alndbs_dir = /db/seqdb
CXX = g++
#CXX = clang++
-CFLAGS = -O3 -march=native
+CFLAGS += -O3 -march=native
RANLIB = ranlib
LD = g++
AR = ar ru
DEL = rm -f
DEFLT = -DM_THREAD=1
-CXX := $(CXX) $(CFLAGS) $(DEFLT)
+CXX := $(CXX) $(CFLAGS) $(CPPFLAGS) $(DEFLT)
.SUFFIXES: .o .cc .h .sh
@@ -88,13 +88,13 @@
ls $(SRC) $(HDR)
spaln: spaln.cc blksrc.o $(SLIB)
- $(CXX) -o $@ spaln.cc blksrc.o $(SLIB) $(ILIB)
+ $(CXX) -o $@ spaln.cc blksrc.o $(SLIB) $(ILIB) $(LDFLAGS)
sortgrcd: sortgrcd.cc $(SLIB)
- $(CXX) -o $@ sortgrcd.cc $(SLIB) $(ILIB)
+ $(CXX) -o $@ sortgrcd.cc $(SLIB) $(ILIB) $(LDFLAGS)
makdbs: makdbs.cc dbs.h seq.h bitpat.h $(SLIB)
- $(CXX) -o $@ makdbs.cc $(SLIB) $(ILIB)
+ $(CXX) -o $@ makdbs.cc $(SLIB) $(ILIB) $(LDFLAGS)
makmdm: makmdm.cc mdm.h $(CLIB)
- $(CXX) -o $@ makmdm.cc $(CLIB) $(ILIB)
+ $(CXX) -o $@ makmdm.cc $(CLIB) $(ILIB) $(LDFLAGS)
dvn: dvn.cc autocomp.h $(ULIB)
$(CXX) -o $@ dvn.cc $(ULIB) $(ILIB)
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