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path: root/wiggletools-flags.patch
blob: e17029fb9b6f9ca47def9971de4dda969121e5b2 (plain)
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--- a/src/Makefile	2020-08-13 10:25:02.781495451 -0400
+++ b/src/Makefile	2020-08-13 10:29:03.068773044 -0400
@@ -1,9 +1,10 @@
-CFLAGS=-g -Wall -O3 -std=gnu99
+CFLAGS+=-g -Wall -O3 -std=gnu99
+LDFLAGS+=
 LIBDIR=../lib
 BINDIR=../bin
 INC=-I../../libBigWig -I../../htslib
 LIB_PATHS=-L${LIBDIR} -L../../libBigWig -L../../htslib
-LIBS= -lwiggletools -l:libBigWig.a -lcurl -l:libhts.a -lgsl  -lgslcblas -lz -lpthread -lm -llzma -lbz2
+LIBS= -lwiggletools -lBigWig -lcurl -lhts -lgsl  -lgslcblas -lz -lpthread -lm -llzma -lbz2
 OPTS=-D_PBGZF_USE
 
 default: lib bin
@@ -12,7 +13,7 @@
 
 ${BINDIR}/wiggletools: ${LIBDIR}/libwiggletools.a wiggletools.o
 	mkdir -p ${BINDIR}
-	${CC} ${CFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools 
+	${CC} ${CFLAGS} ${LDFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools 
 
 lib: ${LIBDIR}/libwiggletools.a