|
seqdistk
|
1.0-2 |
0 |
0.00
|
tools to calculate the distance among sequence |
malacology
|
2023-04-04 19:09 (UTC) |
|
seqcombgo-git
|
r61.7abdfcb-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:43 (UTC) |
|
seqcombgo-bin
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:46 (UTC) |
|
seqcombgo
|
0.0.1-1 |
0 |
0.00
|
Sequence Combination tool written in Golang |
malacology
|
2022-01-18 17:47 (UTC) |
|
seqan3
|
3.3.0-1 |
0 |
0.00
|
The modern C++ library for sequence analysis https://doi.org/10.1016/j.jbiotec.2017.07.017 |
malacology
|
2023-10-06 15:14 (UTC) |
|
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
|
rockpix-ap6255
|
1.0-1 |
0 |
0.00
|
WiFi & BT Firmware patch for ROCK PI X |
malacology
|
2024-03-17 18:19 (UTC) |
|
revbayes-mpi
|
1.2.2-1 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2023-06-10 05:23 (UTC) |
|
revbayes
|
1.2.2-1 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2023-06-10 05:44 (UTC) |
|
raxmlgui
|
2.0.10-2 |
1 |
0.00
|
A new user-friendly program integrating RAxML-NG and ModelTest-NG for cutting-edge phylogenetic analysis. https://doi.org/10.1111/2041-210X.13512 |
malacology
|
2023-12-05 00:03 (UTC) |
|
raxml-ng-mpi
|
1.2.1-1 |
0 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2023-12-22 18:14 (UTC) |
|
raxml-ng
|
1.2.1-1 |
1 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2023-12-22 18:11 (UTC) |
|
raxml-light
|
1.0.9-1 |
0 |
0.00
|
A tool for computing terabyte phylogenies https://doi.org/10.1093/bioinformatics/bts309 |
malacology
|
2022-08-29 01:53 (UTC) |
|
rasp
|
4.2-1 |
0 |
0.00
|
Reconstruct Ancestral State in Phylogenies is a tool for inferring ancestral state |
malacology
|
2021-05-10 08:12 (UTC) |
|
r-treedist
|
2.7.0-2 |
0 |
0.00
|
Calculate and Map Distances Between Phylogenetic Trees |
malacology
|
2024-02-23 00:03 (UTC) |
|
r-ternary
|
2.3.1-2 |
0 |
0.00
|
Create Ternary and Holdridge Plots |
malacology
|
2024-02-23 00:04 (UTC) |
|
r-tbrdist
|
1.0.2-2 |
0 |
0.00
|
Rearrangement Distances Between Unrooted Phylogenetic Trees |
malacology
|
2024-02-23 00:05 (UTC) |
|
r-strap
|
1.6.0-2 |
0 |
0.00
|
Stratigraphic Tree Analysis for Palaeontology |
malacology
|
2024-02-23 00:03 (UTC) |
|
r-rogue
|
2.1.6-2 |
0 |
0.00
|
Identify Rogue Taxa in Sets of Phylogenetic Trees |
malacology
|
2024-02-23 00:05 (UTC) |
|
r-rcpphungarian
|
0.3-2 |
0 |
0.00
|
Solves Minimum Cost Bipartite Matching Problems |
malacology
|
2024-02-23 00:02 (UTC) |
|
r-rarity
|
1.3.8-2 |
0 |
0.00
|
Calculation of Rarity Indices for Species and Assemblages of Species |
malacology
|
2024-03-06 00:01 (UTC) |
|
r-quartet
|
1.2.6-2 |
0 |
0.00
|
Comparison of Phylogenetic Trees Using Quartet and Split Measures |
malacology
|
2024-02-23 00:06 (UTC) |
|
r-protoclust
|
1.6.4-2 |
0 |
0.00
|
Hierarchical Clustering with Prototypes |
malacology
|
2024-02-23 00:01 (UTC) |
|
r-geoscale
|
2.0.1-2 |
0 |
0.00
|
Geological Time Scale Plotting |
malacology
|
2024-02-23 00:01 (UTC) |
|
r-genepop
|
1.2.2-1 |
0 |
0.00
|
Population Genetic Data Analysis Using Genepop |
malacology
|
2024-03-05 00:01 (UTC) |
|
r-fd
|
1.0.12.3-2 |
0 |
0.00
|
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology |
malacology
|
2024-03-06 00:05 (UTC) |
|
r-ecoindr
|
2.0-2 |
0 |
0.00
|
Ecological Indicators |
malacology
|
2024-03-06 00:05 (UTC) |
|
python-ete3
|
3.1.3-1 |
1 |
0.00
|
A Python Environment for (phylogenetic) Tree Exploration |
malacology
|
2023-05-02 12:02 (UTC) |
|
python-dendropy
|
4.6.1-1 |
0 |
0.00
|
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. |
malacology
|
2023-06-09 06:02 (UTC) |
|
pvm
|
3.4.6-10 |
12 |
0.00
|
Parallel Virtual Machine |
malacology
|
2022-10-20 12:01 (UTC) |
|
preseq
|
3.2.0-3 |
0 |
0.00
|
A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. |
malacology
|
2023-07-26 18:17 (UTC) |
|
popart
|
2019.07.15-6 |
0 |
0.00
|
Full-feature software for haplotype network reconstruction. https://doi.org/10.1111/2041-210X.12410 |
malacology
|
2023-07-02 18:33 (UTC) |
|
plume-sqlite
|
0.7.2-1 |
0 |
0.00
|
Federated blogging application |
malacology
|
2022-05-25 01:00 (UTC) |
|
plume-postgres
|
0.7.2-1 |
0 |
0.00
|
Federated blogging application |
malacology
|
2022-05-25 00:54 (UTC) |
|
plume
|
0.7.2-2 |
0 |
0.00
|
Federated blogging application |
malacology
|
2023-02-10 08:18 (UTC) |
|
pleroma-git
|
2.5.50.2023.02.09-1 |
0 |
0.00
|
A microblogging server software that can federate other servers that support ActivityPub |
malacology
|
2023-02-11 14:41 (UTC) |
|
pleroma
|
2.6.2-1 |
0 |
0.00
|
A microblogging server software that can federate other servers that support ActivityPub |
malacology
|
2024-02-22 14:16 (UTC) |
|
pid_children-git
|
r10.749d59c-1 |
0 |
0.00
|
A simple program outputs descendant process ids for each pid given on the command line |
malacology
|
2021-07-12 17:44 (UTC) |
|
picard-tools
|
3.1.1-1 |
8 |
0.00
|
set of tools for working with next generation sequencing data in the BAM format |
malacology
|
2023-11-15 00:03 (UTC) |
|
pibuss
|
1.10.4-0 |
1 |
0.00
|
a BEAST/BEAGLE utility for sequence simulation, which provides an easy to use interface that allows flexible and extensible phylogenetic data fabrication. https://doi.org/10.1186/1471-2105-15-133 |
malacology
|
2023-05-07 11:21 (UTC) |
|
phylosuite
|
1.2.3-2 |
0 |
0.00
|
an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096 |
malacology
|
2023-04-04 19:09 (UTC) |
|
phylonet-hmm
|
0.1-1 |
0 |
0.00
|
An HMM-based comparative genomic framework for detecting introgression in eukaryotes |
malacology
|
2021-05-27 06:12 (UTC) |
|
phylonet
|
3.8.4-3 |
0 |
0.00
|
suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events. https://doi.org/10.1093/sysbio/syy015 |
malacology
|
2022-12-01 18:01 (UTC) |
|
phylogeography
|
1.10.4-0 |
1 |
0.00
|
BEAST PhyloGeography https://doi.org/10.1186/1471-2148-7-214 |
malacology
|
2023-05-07 11:21 (UTC) |
|
phylobayes-mpi
|
1.9-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures. https://doi.org/10.1093/molbev/msh112 |
malacology
|
2022-10-16 08:44 (UTC) |
|
phylobayes
|
4.1e-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures |
malacology
|
2021-05-15 13:14 (UTC) |
|
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
|
phast-win
|
2014.03.10-0 |
0 |
0.00
|
PHylogenetic Analysis for Sankoff Transformations https://doi.org/10.1006/clad.1998.0068 |
malacology
|
2023-07-29 17:57 (UTC) |
|
pee-wee
|
2014.03.10-0 |
0 |
0.00
|
(P)arsimony and (I)mplied (WE)ights |
malacology
|
2023-07-29 17:57 (UTC) |
|
paup-gui
|
4.0a-1 |
0 |
0.00
|
Phylogenetic Analysis Using PAUP |
malacology
|
2021-05-11 17:00 (UTC) |