559 packages found. Page 6 of 12.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-multihiccompare 1.22.0-1 0 0.00 Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available BioArchLinuxBot 2024-05-03 00:24 (UTC)
r-msstatslobd 1.12.0-1 0 0.00 Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD) BioArchLinuxBot 2024-05-01 20:24 (UTC)
r-motif2site 1.8.0-1 0 0.00 Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions pekkarr 2024-05-03 03:20 (UTC)
r-minimumdistance 1.48.0-1 0 0.00 A Package for De Novo CNV Detection in Case-Parent Trios BioArchLinuxBot 2024-05-03 05:22 (UTC)
r-methylmnm 1.42.0-1 0 0.00 detect different methylation level (DMR) BioArchLinuxBot 2024-05-01 19:00 (UTC)
r-messina 1.40.0-1 0 0.00 Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems BioArchLinuxBot 2024-05-01 20:25 (UTC)
r-meb 1.18.0-1 0 0.00 A normalization-invariant minimum enclosing ball method to detect differentially expressed genes for RNA-seq data BioArchLinuxBot 2024-05-03 01:39 (UTC)
r-mdts 1.24.0-1 0 0.00 Detection of de novo deletion in targeted sequencing trios BioArchLinuxBot 2024-05-02 23:41 (UTC)
r-mbased 1.38.0-1 0 0.00 Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection BioArchLinuxBot 2024-05-02 19:49 (UTC)
r-massspecwavelet 1.70.0-1 0 0.00 Peak Detection for Mass Spectrometry data using wavelet-based algorithms BioArchLinuxBot 2024-05-02 03:18 (UTC)
r-madseq 1.30.0-1 0 0.00 Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data BioArchLinuxBot 2024-05-03 05:04 (UTC)
r-lineagespot 1.8.0-1 0 0.00 Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing pekkarr 2024-05-03 05:16 (UTC)
r-kpeaks 1.1.0-7 0 0.00 Determination of K Using Peak Counts of Features for Clustering BioArchLinuxBot 2024-03-07 12:04 (UTC)
r-katdetectr 1.6.0-1 0 0.00 Detection, Characterization and Visualization of Kataegis in Sequencing Data pekkarr 2024-05-06 18:03 (UTC)
r-isotree 0.6.1.1-1 0 0.00 Isolation-Based Outlier Detection pekkarr 2024-03-28 00:02 (UTC)
r-ipath 1.10.0-1 0 0.00 iPath pipeline for detecting perturbed pathways at individual level BioArchLinuxBot 2024-05-01 21:12 (UTC)
r-immunoclust 1.36.0-1 0 0.00 immunoClust - Automated Pipeline for Population Detection in Flow Cytometry BioArchLinuxBot 2024-05-01 19:56 (UTC)
r-icsoutlier 0.4.0-2 0 0.00 Outlier Detection Using Invariant Coordinate Selection pekkarr 2024-04-25 10:38 (UTC)
r-icnv 1.24.0-1 0 0.00 Integrated Copy Number Variation detection BioArchLinuxBot 2024-05-03 05:20 (UTC)
r-iaseq 1.48.0-1 0 0.00 integrating multiple sequencing datasets for detecting allele-specific events BioArchLinuxBot 2024-05-02 04:18 (UTC)
r-hummingbird 1.14.0-1 0 0.00 Bayesian Hidden Markov Model for the detection of differentially methylated regions BioArchLinuxBot 2024-05-02 19:22 (UTC)
r-hireewas 1.22.0-1 0 0.00 Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies BioArchLinuxBot 2024-05-01 18:52 (UTC)
r-hicdoc 1.6.0-1 0 0.00 A/B compartment detection and differential analysis pekkarr 2024-05-03 02:13 (UTC)
r-genomicinteractionnodes 1.8.0-1 0 0.00 A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data pekkarr 2024-05-03 02:50 (UTC)
r-genieclust 1.1.5.2-3 0 0.00 Fast and Robust Hierarchical Clustering with Noise Points Detection pekkarr 2024-04-25 02:41 (UTC)
r-genebreak 1.34.0-1 0 0.00 Gene Break Detection BioArchLinuxBot 2024-05-02 02:30 (UTC)
r-geneaccord 1.15.0-3 0 0.00 Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients BioArchLinuxBot 2023-11-05 18:08 (UTC)
r-fscanr 1.12.0-1 0 0.00 Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output BioArchLinuxBot 2024-04-13 18:01 (UTC)
r-flowploidy 1.30.0-1 0 0.00 Analyze flow cytometer data to determine sample ploidy BioArchLinuxBot 2024-05-01 20:42 (UTC)
r-fcscan 1.18.0-1 0 0.00 fcScan for detecting clusters of coordinates with user defined options BioArchLinuxBot 2024-05-03 04:43 (UTC)
r-exomecopy 1.48.0-1 0 0.00 Copy number variant detection from exome sequencing read depth BioArchLinuxBot 2023-10-26 03:16 (UTC)
r-excluster 1.22.0-1 0 0.00 ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition BioArchLinuxBot 2024-05-03 00:59 (UTC)
r-dynamictreecut 1.63.1-10 0 0.00 Methods for Detection of Clusters in Hierarchical Clustering Dendrograms BioArchLinuxBot 2024-04-24 19:47 (UTC)
r-dmrseq 1.24.0-1 0 0.00 Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing BioArchLinuxBot 2024-05-03 05:32 (UTC)
r-dmrscan 1.26.0-1 0 0.00 Detection of Differentially Methylated Regions BioArchLinuxBot 2024-05-01 22:19 (UTC)
r-dixontest 1.0.4-4 0 0.00 Dixon's Ratio Test for Outlier Detection BioArchLinuxBot 2024-04-24 19:51 (UTC)
r-digittests 0.1.2-4 0 0.00 Tests for Detecting Irregular Digit Patterns BioArchLinuxBot 2024-03-07 12:09 (UTC)
r-detectseparation 0.3-3 0 0.00 Detect and Check for Separation and Infinite Maximum Likelihood Estimates BioArchLinuxBot 2022-11-26 14:34 (UTC)
r-desingle 1.24.0-1 0 0.00 DEsingle for detecting three types of differential expression in single-cell RNA-seq data BioArchLinuxBot 2024-05-01 19:48 (UTC)
r-depecher 1.18.0-1 0 0.00 Determination of essential phenotypic elements of clusters in high-dimensional entities BioArchLinuxBot 2023-10-28 12:45 (UTC)
r-deepsnv 1.50.0-1 0 0.00 Detection of subclonal SNVs in deep sequencing data. BioArchLinuxBot 2024-05-03 04:39 (UTC)
r-dasper 1.9.0-3 0 0.00 Detecting abberant splicing events from RNA-sequencing data BioArchLinuxBot 2024-04-27 20:34 (UTC)
r-consensusseeker 1.32.0-1 0 0.00 Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges BioArchLinuxBot 2024-05-03 01:02 (UTC)
r-codex 1.36.0-1 0 0.00 A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing BioArchLinuxBot 2024-05-03 03:24 (UTC)
r-cnvrd2 1.42.0-1 0 0.00 CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data. BioArchLinuxBot 2024-05-03 04:38 (UTC)
r-cnvpanelizer 1.36.0-1 0 0.00 Reliable CNV detection in targeted sequencing applications BioArchLinuxBot 2024-05-02 00:44 (UTC)
r-cner 1.40.0-1 0 0.00 CNE Detection and Visualization BioArchLinuxBot 2024-05-03 18:11 (UTC)
r-cn.mops 1.50.0-1 0 0.00 cn.mops - Mixture of Poissons for CNV detection in NGS data BioArchLinuxBot 2024-05-02 00:45 (UTC)
r-chromswitch 1.22.0-3 0 0.00 An R package to detect chromatin state switches from epigenomic data BioArchLinuxBot 2024-04-27 22:16 (UTC)
r-changepoint.np 1.0.5-3 0 0.00 Methods for Nonparametric Changepoint Detection pekkarr 2024-04-25 04:03 (UTC)

559 packages found. Page 6 of 12.

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